miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|152039005|gb|ES699446.1|ES699446 CCTGCAGGTACCCGGGAATTCGGCCATTACGGCCGGGGATTATTCGCAAAAAAAAAGTAAGAGCACAGCGGTGAATTTGG
ACGCTCAGAGATCTGACTCTCCATTGAACTGCAGAGACAGCACGCAAGCTAGAGACAATGAGAAGTAGACATGGCTTGAA
GCTCTTCCTGCTCCTCCTGCTCTTCCTCTTCCTCATCATCATCATCATCATCATGATGCAGAGCGAGAAGGAGCAGCAGC
AGAATACTACGGTGGTGAGCCATCTCCCTGGCTACCAAGGACCTCTCCCCTTCTCCCTGAAGACAGGCTACGTGGAGGTG
GACGAGAGCAACGGCGTCCGCTTCTTCTACTACTTCATTCAGTCGGAGAGGAATCCGGCGGAGGATCCCCTCTTGCTCTG
GCTCGCCGGCGGCCCCGGATGCTCCGGCTTCTCTGCCCTTGTCTACGAGAACGGTCCTCTCAGTTTCAAGTCGCATTCCT
ACGTCGATGGTCTGCCAGAGCTGGTGTATAGGCCAGATTCCTGGACCAAGTGGTACGAGGAGCACCCAGAGTTCTTACCG
AATCCACTTTACATTGCCGGAGATTCGTATTCTGGCTTAATTGTTCCACCGCTAACCT




Most similar to sp|Q9C7D6|SCP17_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9C7D6|SCP17_ARATH Serine carboxypeptidase-like 17
           OS=Arabidopsis thaliana GN=SCPL17 PE=2 SV=1
          Length = 437

 Score =  147 bits (372), Expect = 4e-35
 Identities = 70/163 (42%), Positives = 95/163 (58%), Gaps = 41/163 (25%)
 Frame = +3

Query: 249 TVVSHLPGYQGPLPFSLKTGYVEVDESNGVRFFYYFIQSERNPAEDPLLLWLAGGPGCSG 428
           + +  LPG+QGPLPF L+TGY+ V E+   + FYYFI+SE NP +DPLLLWL+GGP CS 
Sbjct: 28  STIRFLPGFQGPLPFELETGYIGVGEAEKDQMFYYFIKSESNPEKDPLLLWLSGGPFCSS 87

Query: 429 FSALVYENGPLSFKSHSYVDGLPELVYRPDSWT--------------------------- 527
           F+AL+YENGP++FK+  Y   +P LV    +WT                           
Sbjct: 88  FTALIYENGPIAFKAEEYNGSIPSLVSTTYAWTKVASILYLDQPVGTGFSYSRNPLADIP 147

Query: 528 --------------KWYEEHPEFLPNPLYIAGDSYSGLIVPPL 614
                         KW ++HPEFL NPLY+AG+SYSG+++P +
Sbjct: 148 SDTGVAKPVNEFLHKWLDKHPEFLSNPLYVAGNSYSGIVIPTI 190